/docs/wdae/modules
/docs/wdae/routes
/docs/dae/modules
temp
dae/reports
*.pyc
.cache
.DS_Store
._.DS_Store
*.log
*.cache
*.db
wdae.sql
.project
.pydevproject
.settings
.ipynb_checkpoints
.vagrant
.coverage
htmlcov
coverage.xml
junit.xml
logs
output
*.tmp
*.swp
gpf-html.tar.gz
.pytest_cache
# *.parquet
/gpf-html.tar.gz
.pytest_cache
metastore_db
setenv.sh
_build/
test_data/
/test_data/
.vscode/
.idea/
*.temp
wdae/docs/_build
gpf-dist.tar.gz
DAE/*.json
.coverage*
coverage/
tmp/
DAE/pyflakes.report
test_data
denovo-cache
__pycache__
.mypy_cache
test_results
scripts/gpf_remote/
scripts/iossifov_2014/
scripts/genotype-iossifov_2014-latest.tar.gz
gpf_remote/
iossifov_2014/
genotype-iossifov_2014-*latest.tar.gz
dae/Makefile
dae/Snakefile
genotype-comp-*latest.tar.gz
phenotype-comp-data-*latest.tar.gz
comp-data/
comp
builds
downloads
results
common_report.json
import
cache
/build-env/
test-results/
Jenkinsfile.generated-stages
/import
/test-results
Jenkinsfile.generated-stages.all
/.build-scripts-tmp-sessions
cache
dae/dae/__build__.py
wdae/wdae/__build__.py
dae/TESTphastCons100way.bedGraph.gz.tbi
dask-worker-space/
temp
.grr
*.egg-info
/data/
dae/test.txt.gz.tbi
tmpvcf
VERSION
BUILD
wdae/wdae/wdae/__build__.py
impala_storage/impala_storage/__build__.py

# hatch-vcs generated version files
core/gpf/_version.py
web_api/gpf_web/gpf_web/_version.py
federation/federation/_version.py
rest_client/rest_client/_version.py
gcp_storage/gcp_storage/_version.py
impala_storage/impala_storage/_version.py
impala2_storage/impala2_storage/_version.py
in.vcf.gz.tbi
test.txt.gz.tbi
monkeytype.sqlite3
monkeytype_config.py
denovo-cache-phenotype.json
userdocs/.vscode
userdocs/_build
userdocs/wdae
.pytest_cache
.vscode
*.retry
gpf-html.tar.gz
gpf-user-html.tar.gz

coverage/
*.log
_html
gpf-wdae-html.tar.gz
temp
build-env/*
cache
data
results
Jenkinsfile.generated-stages.all
.DS_Store
._.DS_Store
projects
dae-mypy.txt
.task-progress
/work
CLAUDE*.md

# Beads / Dolt files (added by bd init)
.dolt/
.beads-credential-key

# bv (beads viewer) local config and caches
.bv/

# tb-eqh phase-5: gain wheel staging dir.
# CI's `Fetch gain wheel` Jenkinsfile stage drops the latest
# successful gain master wheel here. Local devs build on demand
# via `cd ../gain && uv build --package gain-core --out-dir ../gpf/dist/gain`.
/dist/

# tb-eqh phase-5: local-development pyproject override
# (path source for editable gain-core). Devs copy
# pyproject.local.toml.template → pyproject.local.toml. See
# README's "Editable gain for local development" section.
pyproject.local.toml

# Sphinx docs build artefacts. `docs/build_docs.sh` clones
# gpf-getting-started here for `literalinclude` directives,
# runs sphinx into docs/build/, and emits a tarball.
/gpf-getting-started/
/docs/build/
/docs/gpfdocs-html.tar.gz
/docs/.tmp/

# Linked git worktrees used by Claude Code for isolated
# feature development (see superpowers `using-git-worktrees`).
/.worktrees/
